AutoImmune & Rheumatological Triggers and Areas of Treatment
- Danny Dowling
- Jul 19
- 4 min read
Updated: Jul 23

In the treatment and management of autoimmune and rheumatological conditions from a Naturopathic perspective, there are five key underlying imbalances that must be examined and addressed. Naturopathic Doctors refer to these imbalances as potential "obstacles to healing." When these are corrected or minimized, the frequency and severity of disease flares can be reduced. Addressing these underlying factors early on may prevent the need for medications and halt disease progression.
In some cases, preventing severe damage to tissues, organs, or joints necessitates the use of immunosuppressant or DMARD medications. While this approach is more intensive, it still aims to prevent permanent tissue or organ damage, which could otherwise lead to the need for surgery and lifelong medication management.
If you're worried about a family history of autoimmune or rheumatological conditions and wish to take preventive measures against developing them yourself, it's important to pay attention to these five factors, below.

Elevated Inflammation/Inflammatory Markers: (Having a thorough medical intake would inform myself on which inflammatory markers would be most appropriate to investigate, saving the patient time and money. I didn't go to medical school to let labs do all the work; I never take a shotgun approach.)
ESR >4 mm/hr
hs-CRP >3mg/L
IL-6 >10pg/mL
TNF-a >2.2pg/mL
Fecal Calprotectin: >173µg/g
HDL >75mg/dL for women/>90mg/dL for men
Low 25-OH Vitamin D <30ng/mL
Secondary Thrombocytosis/Thrombocythemia (elevated RBC's, Hematocrit, Platelets)
Fibrinogen Activity
Uric Acid
Test:
Blood Markers + Stool Marker (GI-MAP) above.
Insurance will cover: ESR, hs-CRP, Lipid Panel, CBC w Diff, maybe Uric Acid.
Out of Pocket: IL-6, TNF-a, Fibrinogen Activity, GI-MAP stool test.
Hormonal Imbalances: (HPG-HPA-axis Dysfunction)
HPG-Axis: Hypothalamic/Pituitary/Gonadal-Axis > Low or Excess Estrogens, Progesterone, Testosterone
HPA-Axis: Hypothalamic/Pituitary/Adrenal-Axis > Low or Excess Estrogens, Progesterone, Testosterone
Thyroid Function: TSH/T3/T4, TBG, rT3
Test:
DUTCH Complete(urine) - Out of Pocket.
Blood Hormone Markers - Insurance.
Chronic Infections:
Bacterial (Bowel Dysbiosis,SIBO/IBS/IBD)
Viral (EBV, CMV, HHV-6)
Fungal (Black molds/Candida/SIFO)
Tests: (depending on symptoms present in visit)
Out of Pocket:
SIBO 3hr Breath Test
GI-MAP Stool Test - IBS, IBD, Candida, Parasitic infections.
Blood: EBV VCA, Early Ag, Nuclear Ag IgG's(testing for CAEBV), CMV IgG, HHV-6 IgG,
MycoTox Urine and Antibody Tests- Black mold. HERTSMI Home Testing
Stressors/Trauma: (Dysautonomia)
Physical: Any blunt-force trauma, laceration, or injury that jolts the autonomic nervous system.
Extreme stimulation of the Sympathetic (Fight or Flight Nervous system).
Emotional: Destructive relationships, A breakup/Divorce, Isolation/Loneliness, a Legal Battle, etc.. Again Autonomic Nervous system dysregulation.
Physiological: Blood sugar dysregulation, Hormone Imbalances(Sex and Stress hormones), dehydration, Toxin overload (alcohol, smoke), Inflammation, Chronic infections, Malnutrition/Poor Nutrition, Eating food allergies/sensitivities without healing Intestinal Permeability(Leaky Gut) - treating intestinal dysbiosis and providing nutrients L-Glutamine, SCFA's(Butyrate), Fiber, Probiotics.
Environmental Toxins: (Hard to avoid some of these, but they can add up quickly)
Some Common Food Triggers: Gluten, Dairy, Eggs, Nightshades
Heavy metal exposures(Mercury Amalgam fillings/Large fish)
Correlation w/ Vaccines (Molecular Mimicry)
Herbicides/pesticides (Round-Up)
Mold Toxin Exposure (Ochratoxin-A, Citrinin, Gliotoxin, etc..)
Synthetic Fragrances
Petroleum-chemical exposures
Excessive EMF's close to vital organs (phones, laptops, bluetooth headphones, 5G-towers, wifi)
Synthetic Food preservatives/coloring/flavor enhancers (
Combusted plant material (smoke/smoking)
Unfiltered Municipal Tap Water (See what's in your city's Tap Water)




Areas of Treatment:
Anti-Inflammatory/Immune-Modulating Support:
Anti-Inflammatory/Mediterranean Diet:
Increasing Omega-3 Fatty acids: Small, Wild-Caught, Cold-Water Fish (Sardines, Herring, Anchovies, Salmon, Cod, Trout)
Increasing Dietary Bioflavonoids:
Carotenoids: (ß-carotene, Lycopene, Lutein, Zeaxanthin, Quercetin)
Reds, Oranges, Yellows
Flavonoids: (Anthocyanins)
Blues, Purples
Indoles, Glucosinolates, Isothiocyanates: (Sulfurophane)
Greens(Cruciferous Veggies)
Inositol & Isoflavones:
Whites
Polyphenols:
ECGC(Green Tea), Resveratrol (Red Grapes), Flavonols (Dark Chocolate), Oleocanthal (Olive Oil)
Terpenes: (Limonene, Carnosol)
Citrus peel, cherries, rosemary.
Avoidance/Minimization of (Top-3):
Oxidized Seed oils: Vegetable/Canola/Rapeseed Oil, Soybean, Cottonseed, Peanut, Sunflower, Sesame. - Look for Avocado oil or Olive oil.
High Fructose Corn Syrup(HFCS) & Added Simple Sugars.
Highly Processed Carbohydrates(HPCS) - Breads, pastries, crackers, cookies, etc..
Herbal Medicine Anti-Inflammatories:
Medicinal Mushrooms Immunomodulators:
Reishi
Turkey Tail
Cordyceps
Shiitake
Hormone Balancing Support:
High Estrogens:
DIM
Ca-D-Glucurate
Alpha-Lipoic Acid
Milk Thistle Seed
Avoidance of Xenoestrogens
Implementation of Phytoestrogens
Low Estrogens:
Estrogenic Herbs:
Black Cohosh
Alfalfa
Chaste Tree Berry
Licorice Root
Lavender
Red Clover
Fennel
Pumpkin seeds
Implementation of Phytoestrogens
Organic Soy, Beans, Nuts(Walnuts), Seeds(Pumpkin, Sunflower, Chia, Ground Flax, Sesame).
Bioidentical Hormone Replacement Therapy(BHRT):
Oral, Topicals, Pellets, Patches.
Low Progesterone:
Progesterogenic Herbs:
Chaste Tree Berry
Shatavari
Black Cohosh
Lady's Mantle
Maca
Siberian Ginseng
Implementation of Progesterogenic Foods:
Nuts, Dark Chocolate, Poultry(Chicken/Turkey), Citrus fruits, Leafy Greens, Peppers, Avocados, Salmon, Shrimp, Oats, Cruciferous Veggies (Above)
Low Testosterone:
DHEA - dose varies.
Testosterone Replacement Therapy (TRT)
Herbs that Directly and Indirectly Increase tT & fT
Tribulus terrestris
TongKat Ali
Saw Palmetto - helpful in combination with TRT or alone
Pygeum - helpful in combination with TRT or alone
Nettle Root - helpful in combination with TRT or alone
American Ginseng
Ashwagandha
References:
Brice-Ytsma, Hananja, and Nathalie Chidley. Herbal Medicine in Treating Gynaecological Conditions 1, Herbs, Hormones, Pre-Menstrual Syndrome and Menopause. Aeon, 2020.
The rest are linked to the words above.
If you want more research please reachout - I ran out of time attaching the data above.




